Our weekly journal club is a fun way to learn more about the field of optics and practice your presentation skills in a low pressure environment among your peers. Currently we meet on Fridays at 4pm on our MS Teams Journal Club channel. Nervous to present right away? Don’t worry! We welcome new members to come by and participate anytime during the semester, then decide if you would like to sign up with the next round of presenters or not!

Upcoming dates and presenters as well as some of the past presented papers listed below:

Summer 2021

Date Presenter Title Journal information DOI
April 2nd Dylan Son      
April 16th Tara Urner      
April 23rd Visiting proferssor: Dr. Jonathan Liu “Nondestructive 3D pathology with open-top light-sheet microscopy for precision medicine”    
May 7th Ashkan Ojaghi      
May 14th Dr. Jake Guang      
May 21st Visiting professor: Dr. Roarke Horstmeyer      
May 28th Caroline Filan      
June 4th Vishy Gorti      
June 11th Dr. Paco Robles      
June 18th Visiting professor: Dr. Kenny Tao      
June 25th Nischita Kaza      
July 9th Visiting professor: Dr. Changhuei Yang      
July 16th Paloma Casteleiro      
July 23rd Visiting professor: Dr. Nicholas Durr      
July 30th Dr. Xavier Audier      
August 6th Dr. Soheil Soltani      
August 13th Patrick Ledwig      

Spring 2021

Date Presenter Title Journal information DOI
January 8th Caroline Filan Rapid assessment of breast tumor margins using deep ultraviolet fluorescence scanning microscopy Journal Of Biomedical Optics (2020) https://10.1117/1.JBO.25.12.126501
January 15th Nischita Kaza Miniscope3D: optimized single-shot miniature 3D fluorescence microscopy Light Science Applications (2020) https://doi.org/10.1038/s41377-020-00403-7
January 22nd Tara Urner High-sensitivity multispeckle diffuse correlation spectroscopy Neurophotonics (2020) https://doi.org/10.1117/1.NPh.7.3.035010
January 29th Dylan Son Super-Resolution Optofluidics Scanining Microsocpy Lab on a Chip (2021) https://doi.org/10.1039/d0lc00889c
February 5th Patrick Ledwig      
February 12st Ashkan Ojaghi Intelligent image-based deformation-assisted cell sorting with molecular specificity Nature Methods (2020) https://doi.org/10.1038/s41592-020-0831-y
February 19th Dr. Jake (Zhe) Guang Medical hyperspectral imaging: a review Journal of Biomedical Optics (2014) https://doi.org/10.1117/1.JBO.19.1.010901
March 19th Dr. Soheil Soltani Microscopy with undetected photons in the mid-infrared Science Advances (2020) https://doi.org/10.1126/sciadv.abd0264
March 26th Dr. Xavier Audier A Time-Encoded Technique for fibre-based hyperspectral broadband stimulated Raman microscopy Nature Communications (2015) https://doi.org/10.1038/ncomms7784
August 27th Dylan Son      

Fall 2020

Date Presenter Title Journal information DOI
September 4th Dylan Son Imaging Volumetric Dynamics at High Speed in Mouse and Zebrafish Brain With Confocal Light Field Microscopy Nature Biotechnology (2020) https://doi.org/10.1038/s41587-020-0628-7
September 11th Tara Urner Non-invasive Diffuse Correlation Tomography Reveals Spatial and Temporal Blood Flow Differences in Murine Bone Grafting Approaches Biomedical Optics Express (2016) https://doi.org/10.1364/BOE.7.003262
September 18th Patrick Ledwig Dynamic conjugate F-SHARP microscopy Light: Science and Application https://doi.org/10.1038/s41377-020-00348-x
September 25th Rob Nikolai Super-resolution Localization Photoacoustic Microscopy Using Intrinsic Red Blood Cells as Contrast Absorbers Light: Science and Application (2019) https://doi.org/10.1038/s41377-019-0220-4
October 2nd Ashkan Ojaghi Classification of T-cell activation via autofluorescence lifetime imaging Nature Biomedical Engineering (2020) https://doi.org/10.1038/s41551-020-0592-z
October 9th Paloma Casteleiro Converting lateral scanning into axial focusing to speed up three-dimensional microscopy BioRxiv https://doi.org/10.1101/2020.03.06.981472
October 16th Michael Giacomelli, Ph.D. Research talk: multiphoton and fluorescence imaging for surgical pathology and clinical medicine Invited speaker https://www.urmc.rochester.edu/labs/giacomelli.aspx
October 23rd Dr. Jake (Zhe) Guang Optical fiber bundles: Ultra-slim light field imaging probes Science Advances https://doi.org/0.1126/sciadv.aav1555
October 30th Dr. Xavier Audier Three-photon neuronal imaging in deep mouse brain Optica https://doi.org/10.1364/OPTICA.395825
November 6th Dr. Paco Robles High-sensitivity and high-specificity biomechanical imaging by stimulated Brillouin scattering microscopy Nature Methods https://doi.org/10.1038/s41592-020-0882-0
November 13th Dr. Soheil Soltani  High-contrast multifocus microscopy with a single camera and z-splitter prism Optica (2020) https://doi.org/10.1364/OPTICA.404678
November 20th Rowan Brothers Time-Domain Diffuse Correlation Spectroscopy Optica (2016) https://doi.org/10.1364/OPTICA.3.001006

Summer 2020

Date Presenter Title Journal information DOI
Aug 20th Soheil Soltani Deep Tissue Space-Gated Microscopy via Acousto-Optic Interaction Nature Communications (2020) https://doi.org/10.1038/s41467-020-14514-7
Aug 21th Paloma DeepSTORM3D: Dense 3D Localization Microscopy and PSF Design by Deep Learning Nature Methods (2020) https://doi.org/10.1038/s41592-020-0853-5
Aug 14th Nischita Kaza Phase imaging with an untrained neural network Light: Science & Applications (2020) https://doi.org/10.1038/s41377-020-0302-3
Aug 7th Xavier Audier Raman image-activated cell sorting Nature Communications (2020) https://doi.org/10.1038/s41467-020-17285-3
July 31th Patrick Ledwig Airy-beam tomographic microscopy Optica (2020) https://doi.org/10.1364/OPTICA.389894
July 24th Dylan Son Virtual-freezing fluorescence imaging flow cytometry Nature Communications (2020) https://doi.org/10.1038/s41467-020-14929-2
July 17th Tara Urner Diffuse Speckle Contrast Analysis (DSCA) for Deep Tissue Blood Flow Monitoring Advanced Biomedical Engineering (2020) https://doi.org/10.14326/abe.9.21
July 10th Jake Guang Three-dimensional holographic optical manipulation through a high-numerical-aperture soft-glass multimode fibre Nature Photonics (2017) https://doi.org/10.1038/s41566-017-0053-8
July 3th Ashkan Ojaghi Stain-free histopathology by programmable supercontinuum pulses Nature Photonics (2016) https://doi.org/10.1038/nphoton.2016.94
June 26th Xavier Audier Fourier ptychography: current applications and future promises Optics Express (2020) https://doi.org/10.1364/OE.386168
June 19th Soheil Soltani Harmonic optical tomography of nonlinear structures Nature Photonics (2020) https://doi.org/10.1038/s41566-020-0638-5
June 12th Paloma Real-time 3D movement correction for two-photon imaging in behaving animals Nature Methods (2020) https://doi.org/10.1038/s41592-020-0851-7
June 5th Nischita Kaza Endo-microscopy beyond the Abbe and Nyquist limits Light: Science & Applications (2020) https://doi.org/10.1038/s41377-020-0308-x
May29th Francisco Robles High-speed interferometric imaging reveals dynamics of neuronal deformation during the action potential PNAS (2020) https://doi.org/10.1073/pnas.1920039117
May 22th Dylan Son Structured illumination microscopy using a photonic chip Nature Photonics (2020) https://doi.org/10.1038/s41566-020-0620-2
May 15th Patrick Ledwig Label-free biochemical quantitative phase imaging with mid-infrared photothermal effect Optica (2020) https://doi.org/10.1364/OPTICA.390186
May 8th Ashkan Field-resolved infrared spectroscopy of biological systems Nature (2020) https://doi.org/10.1038/s41586-019-1850-7
May 1st Tara Urner Three-dimensional localization microscopy in live flowing cells Nature Nanotechnology (2020) https://doi.org/10.1038/s41565-020-0662-0
April 24th Jake Guang 3d cellular-resolution imaging in arteries using few-mode interferometry Light: Science & Applications (2019) https://doi.org/10.1038/s41377-019-0211-5
April 17th Paco Robles Content-aware image restoration: pushing the limits of fluorescence microscopy Nature Methods (2018) https://doi.org/10.1038/s41592-018-0216-7
April 10th Patrick Ledwig In vivo volumetric imaging by crosstalk-free full-field OCT Optics (2019) https://doi.org/10.1364/OPTICA.6.000608
April 3rd Soheil Soltani Brillouin microscopy: an emerging tool for mechanobiology Nature Methods (2019) https://doi.org/10.1038/s41592-019-0543-3
March 27th Nischita Kaza Simultaneous multiplane imaging with reverberation two-photon microscopy Nature Methods (2020) https://doi.org/10.1038/s41592-019-0728-9